Research engineer in data analysis - ,

Our group uses systems biology approaches based on proteomics to characterize protein function and interactions in gut microbiome species. We are looking for a data scientist to analyze data and develop methods to complement our proteomics approaches. Apply before the deadline on April 27th  2023.

Project description
Our group is interested in studying and modulating protein function in the species of the human microbiome. We use systems biology approaches based on proteomics to understand how these species utilize nutrients or are affected by drugs.

We are looking for a research engineer to perform analyses of proteomics data, and to use computational approaches to predict protein function. You will support multiple projects from other team members, as well as develop and implement new methodologies. You will also be responsible for IT infrastructure and data management within the group.

Work tasks

You will be responsible for:

• Analysis of mass spectrometry data, and biological interpretation of the results
• Use computational approaches to predict protein function
• Provide support for projects from other team members
• Creating solutions for data visualization (e.g., developing of interactive webpages to visualize results)
• Data management and managing of the group’s IT infrastructure.

Qualifications

It is required that you:

• Have an Master´s degree in a field related to biology or chemistry
• Have knowledge and experience with programming languages commonly used in bioinformatics (R and/or python)
• Have experience with transcriptomics or proteomics data analysis
• Have computational structural biology experience, such as insight into protein structures and using computational methods to predict protein structure (e.g., AlphaFold) and suggest protein function (e.g., Foldseek, DeepFRI)
• Have experience using high performance computing clusters
• Have experience with web development
• Can communicate and present results in English

You are structured and stable under pressure. You enjoy working both autonomously and cooperate with other people. Furthermore, you are good at problem solving and have good verbal skills.

Special merit will be given to candidates that have experience with other programming languages.

Application

The application should include a CV, a copy of the relevant diploma and other relevant certificates/grades as well as names and contact details of at least two reference persons.

The application must be submitted via our e-recruitment system no later than April 27th 2023.

Terms of employment

The employment is full time and a permanent employment , probational period can be used. The employment will start 2023-07-01, or as otherwise agreed.

Information
For more information please contact André Mateus, andre.mateus@umu.se. https://mateuslab.com/.

The Department of Chemistry is one of the largest departments within the Faculty of Science and Technology with approximately 200 employees, of which approximately 50 doctoral students, and a strong and expanding research. The Department has three major research areas: Biological Chemistry, Environmental and Biogeochemistry, and Technical Chemistry. We are also a strong partner in the KBC, Chemical-Biological Center. Information about the postgraduate education can be found on the Faculty of Science and Technology website:

www.umu.se/en/faculty-of-science-and-technology/education/doctoral-studies/chemistry/.